PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016512037.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 247aa    MW: 27299.3 Da    PI: 5.7916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016512037.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009188110123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C++ F ++  L  H++ H
  XP_016512037.1  88 FTCNFCKRKFYSSQALGGHQNAH 110
                     89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.88E-686115No hitNo description
PROSITE profilePS5015711.21988115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
METSKFDIEV QVSSGIDSDI TSQVASNIEF SQLSSEHLSL DLSLSFKSSI DEFASQDSIG  60
FSVSSTCESS NEPATQNSGG ETAVRRVFTC NFCKRKFYSS QALGGHQNAH KRERTLAKRA  120
MRMGIFSDQR YANLAALSLH GVPSARSLGI KAHSSVHPHG FPPTMSSLDF RTSARFEYGQ  180
QQTPPLYVED IDEADQLLWP GSFRQVTNFD VSHHPTFAFA GCSNMTSLEW TPSVEKDELT  240
PDLTLRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775040.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_016512037.10.0PREDICTED: zinc finger protein 4-like
SwissprotQ392631e-38ZFP4_ARATH; Zinc finger protein 4
TrEMBLM1C6B61e-131M1C6B6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000607301e-130(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12832347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.15e-40zinc finger protein 4